No. words: 1068; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.9 (1,1:1010)   50  3.51 0.00 0.00  USDA018F_B08_BE443797Td10P035B03P004A101F1_062.ab1      665   721 (0)  C USDA018R_B08_BE443797Td10P035B03P004A101R1_062.ab1   (0)   347   291 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1    USDA018F_B08_BE443797Td10P035B03P004A101F1_062.ab1     1 
  672  C USDA018R_B08_BE443797Td10P035B03P004A101R1_062.ab1   340 
Contig length: old 1011, new 1011

Contig length: old 1011, new 1011
New start: 0 
S Change at: 597; seg lengths: entry 1, contig 1