No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.9 (1,1:681)  655  0.00 0.00 0.00  USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1        5   682 (52)  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   (36)   678     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   714 
   60    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1    28 
   80  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   635 
   84    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1    52 
  116  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   599 
  120    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1    88 
  192  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   523 
  196    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   164 
  432  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   283 
  436    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   404 
  456  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   259 
  460    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   428 
  484  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   231 
  488    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   456 
  532  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   183 
  580    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   548 
  584  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   131 
  600    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   568 
  604  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1   111 
  644    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   612 
  648  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1    67 
  664    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   632 
  672  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1    43 
  692    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   660 
  700  C USDA024R_B08_BE443797Td10P043F07P004A041R1_062.ab1    15 
  704    USDA024F_B08_BE443797Td10P043F07P004A041F1_062.ab1   672 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0