No. words: 1586; after pruning: 1560


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 2.3 (1,1:1481)   98  0.00 0.00 0.00  USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1      690   793 (0)  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   (0)   793   690 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  54 nodes

 29 str. conn. components

Path
    1    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1     1 
  698  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   785 
  702    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1   702 
  706  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   777 
  710    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1   710 
  714  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   769 
  722    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1   722 
  726  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   757 
  746    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1   746 
  750  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   733 
  762    USDA005R3_B03_BE443797Tu02P004A04A10R3_029.ab1   762 
  766  C USDA005F3_B03_BE443797Tu02P004A04A10F3_029.ab1   717 
Contig length: old 1482, new 1482

Contig length: old 1482, new 1482
New start: 0