No. words: 1574; after pruning: 1464


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.7 (1,1:769)  745  0.92 0.13 0.13  USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1        3   767 (21)  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   (18)   768     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   786 
   46    USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1    29 
  100  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   687 
  104    USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1    87 
  108  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   679 
  112    USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1    95 
  244  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   543 
  332    USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1   315 
  534  C USDA016R_C01_BE443835As01P037B03P037B091R1_011.ab1   253 
  764    USDA016F_C01_BE443835As01P037B03P037B091F1_011.ab1   747 
Contig length: old 804, new 805

Contig length: old 805, new 805
New start: 0