No. words: 1196; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:768)  395  0.74 0.25 0.00  USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1        2   409 (0)  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   (18)   769   361 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   787 
   46    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1    28 
   68  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   720 
   72    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1    54 
   96  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   692 
  100    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1    82 
  216  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   572 
  224    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1   206 
  240  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   548 
  340    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1   322 
  344  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   444 
  356    USDA016F_D01_BE443835As02P037B03P037B091F1_009.ab1   338 
  367  C USDA016R_D01_BE443835As02P037B03P037B091R1_009.ab1   421 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0