No. words: 1509; after pruning: 1399


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:719)  705  0.97 0.14 0.00  USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1        1   720 (31)  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   (37)   721     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   758 
   76    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1    38 
   88  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   671 
   92    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1    54 
  120  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   639 
  124    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1    86 
  176  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   583 
  180    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   142 
  188  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   571 
  192    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   154 
  232  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   527 
  313    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   275 
  529  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1   230 
  666    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   628 
  670  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1    89 
  674    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   636 
  682  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1    77 
  686    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   648 
  706  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1    53 
  714    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   676 
  718  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1    41 
  726    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   688 
  734  C USDA016R_E01_BE443835At01P037B03P037B091R1_007.ab1    25 
  749    USDA016F_E01_BE443835At01P037B03P037B091F1_007.ab1   711 
Contig length: old 789, new 789

Contig length: old 789, new 789
New start: 0