No. words: 1552; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:772)  748  0.53 0.00 0.00  USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1        1   756 (0)  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   (23)   773    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   796 
   39    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1    16 
   43  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   754 
   51    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1    28 
  111  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   686 
  115    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1    92 
  203  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   594 
  207    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   184 
  219  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   578 
  239    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   216 
  255  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   542 
  339    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   316 
  355  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   442 
  371    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   348 
  475  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   322 
  487    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   464 
  515  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   282 
  531    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   508 
  539  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   258 
  640    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   617 
  644  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1   153 
  720    USDA016F_F01_BE443835At02P037B03P037B091F1_005.ab1   697 
  724  C USDA016R_F01_BE443835At02P037B03P037B091R1_005.ab1    73 
Contig length: old 796, new 796

Contig length: old 796, new 796
New start: 0