No. words: 1834; after pruning: 1808


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.4 (1,1:767)  760  0.00 0.00 0.00  USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1        4   765 (141)  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1   (163)   765     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1   928 
  183    USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1    23 
  187  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1   742 
  195    USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1    35 
  211  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1   718 
  219    USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1    59 
  803  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1   126 
  867    USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1   707 
  875  C USDA016R_G01_BE443835Ld01P037B03P037B091R1_003.ab1    54 
  903    USDA016F_G01_BE443835Ld01P037B03P037B091F1_003.ab1   743 
Contig length: old 1066, new 1066

Contig length: old 1066, new 1066
New start: 0