No. words: 1806; after pruning: 1780


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:774)  760  0.13 0.00 0.26  USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1        1   775 (88)  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1   (170)   773     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1   943 
  186    USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1    16 
  190  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1   754 
  198    USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1    28 
  206  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1   738 
  223    USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1    54 
  799  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1   145 
  895    USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1   726 
  899  C USDA016R_H01_BE443835Ld02P037B03P037B091R1_001.ab1    45 
  919    USDA016F_H01_BE443835Ld02P037B03P037B091F1_001.ab1   750 
Contig length: old 1031, new 1032

Contig length: old 1032, new 1032
New start: 0