No. words: 1787; after pruning: 1747


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.1 (1,1:774)  759  0.13 0.00 0.26  USDA016F_A02_BE443835Ld03P037B03P037B091F1_016.ab1        4   776 (93)  C USDA016R_A02_BE443835Ld03P037B03P037B091R1_016.ab1   (147)   771     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C USDA016R_A02_BE443835Ld03P037B03P037B091R1_016.ab1   918 
  167    USDA016F_A02_BE443835Ld03P037B03P037B091F1_016.ab1    23 
  195  C USDA016R_A02_BE443835Ld03P037B03P037B091R1_016.ab1   724 
  199    USDA016F_A02_BE443835Ld03P037B03P037B091F1_016.ab1    55 
  471  C USDA016R_A02_BE443835Ld03P037B03P037B091R1_016.ab1   448 
  491    USDA016F_A02_BE443835Ld03P037B03P037B091F1_016.ab1   347 
  539  C USDA016R_A02_BE443835Ld03P037B03P037B091R1_016.ab1   380 
  905    USDA016F_A02_BE443835Ld03P037B03P037B091F1_016.ab1   762 
Contig length: old 1012, new 1012

Contig length: old 1012, new 1012
New start: 0