No. words: 1761; after pruning: 1721


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.9 (1,1:781)  769  0.13 0.00 0.13  USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1        3   779 (126)  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   (77)   779     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   856 
   81    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1     6 
   85  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   772 
   97    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1    22 
  183  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   674 
  187    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   112 
  191  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   666 
  195    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   120 
  219  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   638 
  227    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   152 
  339  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1   518 
  763    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   688 
  767  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1    90 
  799    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   724 
  803  C USDA016R_B02_BE443835Ld04P037B03P037B091R1_014.ab1    54 
  839    USDA016F_B02_BE443835Ld04P037B03P037B091F1_014.ab1   764 
Contig length: old 979, new 980

Contig length: old 980, new 980
New start: 0