No. words: 1666; after pruning: 1626


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.6 (1,1:773)  756  0.26 0.00 0.26  USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1        3   775 (67)  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   (53)   771     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   824 
   57    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1     6 
   61  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   764 
   69    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1    18 
   97  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   728 
  111    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1    60 
  249  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   576 
  253    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1   202 
  281  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   544 
  285    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1   234 
  341  C USDA016R_C02_BE443835Ld05P037B03P037B091R1_012.ab1   484 
  801    USDA016F_C02_BE443835Ld05P037B03P037B091F1_012.ab1   750 
Contig length: old 892, new 893

Contig length: old 893, new 893
New start: 0