No. words: 1833; after pruning: 1765


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.4 (1,1:784)  771  0.13 0.00 0.26  USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1        3   786 (118)  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   (147)   782     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   929 
  167    USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1    22 
  253  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   677 
  257    USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1   112 
  261  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   669 
  265    USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1   120 
  409  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   521 
  501    USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1   356 
  609  C USDA016R_E02_BE443835Ld07P037B03P037B091R1_008.ab1   321 
  909    USDA016F_E02_BE443835Ld07P037B03P037B091F1_008.ab1   764 
Contig length: old 1048, new 1049

Contig length: old 1049, new 1049
New start: 0 
S Change at: 69; seg lengths: entry 1, contig 1
S Change at: 128; seg lengths: entry 1, contig 1