No. words: 1635; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:772)  722  0.27 0.00 0.27  USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1       38   775 (124)  C USDA016R_G02_BE443835Ld09P037B03P037B091R1_004.ab1   (0)   736     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1     1 
   45  C USDA016R_G02_BE443835Ld09P037B03P037B091R1_004.ab1   729 
   60    USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1    60 
   72  C USDA016R_G02_BE443835Ld09P037B03P037B091R1_004.ab1   702 
   76    USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1    76 
  100  C USDA016R_G02_BE443835Ld09P037B03P037B091R1_004.ab1   674 
  104    USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1   104 
  630  C USDA016R_G02_BE443835Ld09P037B03P037B091R1_004.ab1   144 
  750    USDA016F_G02_BE443835Ld09P037B03P037B091F1_004.ab1   750 
Contig length: old 899, new 899

Contig length: old 899, new 899
New start: 0