No. words: 1758; after pruning: 1732


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.5 (1,1:772)  760  0.00 0.00 0.26  USDA016F_H02_BE443835Ld10P037B03P037B091F1_002.ab1        2   774 (93)  C USDA016R_H02_BE443835Ld10P037B03P037B091R1_002.ab1   (120)   771     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA016R_H02_BE443835Ld10P037B03P037B091R1_002.ab1   891 
  140    USDA016F_H02_BE443835Ld10P037B03P037B091F1_002.ab1    21 
  168  C USDA016R_H02_BE443835Ld10P037B03P037B091R1_002.ab1   724 
  172    USDA016F_H02_BE443835Ld10P037B03P037B091F1_002.ab1    53 
  748  C USDA016R_H02_BE443835Ld10P037B03P037B091R1_002.ab1   144 
  878    USDA016F_H02_BE443835Ld10P037B03P037B091F1_002.ab1   760 
Contig length: old 985, new 985

Contig length: old 985, new 986
New start: 0 
I Change at: 877; seg lengths: entry 1, contig 0