No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.1 (1,1:497)  490  0.00 0.00 0.20  USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1        1   497 (44)  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   (54)   497     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   551 
  126    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1    72 
  134  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   418 
  174    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   120 
  206  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   346 
  242    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   188 
  250  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   302 
  286    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   232 
  310  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   242 
  342    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   288 
  350  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   202 
  366    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   312 
  394  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1   158 
  402    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   348 
  478  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1    74 
  482    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   428 
  486  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1    66 
  494    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   440 
  518  C USDA032R_H03_BE443835Sn24P057A01P037B091R1_017.ab1    34 
  526    USDA032F_H03_BE443835Sn24P057A01P037B091F1_017.ab1   472 
Contig length: old 594, new 595

Contig length: old 595, new 595
New start: 0