No. words: 1305; after pruning: 1279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:618)  607  0.00 0.00 0.32  USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1        1   620 (35)  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   (32)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   650 
   72    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1    40 
   80  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   571 
   84    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1    52 
   96  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   555 
  116    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1    84 
  132  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   519 
  172    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   140 
  284  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   367 
  336    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   304 
  344  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   307 
  380    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   348 
  392  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   259 
  480    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   448 
  492  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   159 
  500    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   468 
  524  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1   127 
  540    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   508 
  556  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1    95 
  564    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   532 
  580  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1    71 
  588    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   556 
  592  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1    59 
  604    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   572 
  608  C USDA032R_H06_BE443835Sn24P057B01P037B091R1_034.ab1    43 
  624    USDA032F_H06_BE443835Sn24P057B01P037B091F1_034.ab1   592 
Contig length: old 686, new 687

Contig length: old 687, new 687
New start: 0