No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:616)  606  0.00 0.00 0.32  USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1        1   618 (36)  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   (43)   616     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   659 
   47    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1     4 
   75  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   585 
   79    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1    36 
  151  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   509 
  155    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   112 
  263  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   397 
  351    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   308 
  355  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   305 
  395    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   352 
  415  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   245 
  495    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   452 
  503  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   157 
  511    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   468 
  535  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1   125 
  547    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   504 
  563  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1    97 
  571    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   528 
  591  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1    69 
  599    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   556 
  619  C USDA032R_C05_BE443835Ta11P057B01P037B091R1_043.ab1    41 
  635    USDA032F_C05_BE443835Ta11P057B01P037B091F1_043.ab1   592 
Contig length: old 696, new 697

Contig length: old 697, new 697
New start: 0