No. words: 1091; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.6 (1,1:497)  484  0.00 0.00 0.20  USDA032F_D02_BE443835Ta12P057A01P037B091F1_010.ab1        5   495 (43)  C USDA032R_D02_BE443835Ta12P057A01P037B091R1_010.ab1   (60)   493     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA032R_D02_BE443835Ta12P057A01P037B091R1_010.ab1   553 
  128    USDA032F_D02_BE443835Ta12P057A01P037B091F1_010.ab1    72 
  180  C USDA032R_D02_BE443835Ta12P057A01P037B091R1_010.ab1   374 
  244    USDA032F_D02_BE443835Ta12P057A01P037B091F1_010.ab1   188 
  276  C USDA032R_D02_BE443835Ta12P057A01P037B091R1_010.ab1   278 
  300    USDA032F_D02_BE443835Ta12P057A01P037B091F1_010.ab1   244 
Contig length: old 593, new 594

Contig length: old 594, new 594
New start: 0