No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:621)  519  0.56 0.00 0.37  USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1       85   624 (30)  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   (0)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1     1 
  180  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   443 
  184    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   184 
  220  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   403 
  304    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   304 
  372  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   251 
  416    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   416 
  424  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   199 
  456    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   456 
  472  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   151 
  476    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   476 
  492  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1   131 
  508    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   508 
  524  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1    99 
  528    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   528 
  536  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1    87 
  540    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   540 
  544  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1    79 
  564    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   564 
  584  C USDA032R_D05_BE443835Ta12P057B01P037B091R1_041.ab1    39 
  588    USDA032F_D05_BE443835Ta12P057B01P037B091F1_041.ab1   588 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0