No. words: 1091; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.8 (1,1:496)  489  0.00 0.00 0.20  USDA032F_E02_BE443835Ta13P057A01P037B091F1_008.ab1        1   496 (44)  C USDA032R_E02_BE443835Ta13P057A01P037B091R1_008.ab1   (55)   496     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_E02_BE443835Ta13P057A01P037B091R1_008.ab1   551 
  239    USDA032F_E02_BE443835Ta13P057A01P037B091F1_008.ab1   184 
  307  C USDA032R_E02_BE443835Ta13P057A01P037B091R1_008.ab1   245 
  403    USDA032F_E02_BE443835Ta13P057A01P037B091F1_008.ab1   348 
Contig length: old 594, new 595

Contig length: old 595, new 595
New start: 0