No. words: 1171; after pruning: 1145


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:616)  508  0.19 0.00 0.19  USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1      101   618 (36)  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1   (0)   517     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1     1 
  244  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1   374 
  276    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   276 
  392  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1   226 
  404    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   404 
  412  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1   206 
  472    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   472 
  492  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1   126 
  508    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   508 
  524  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1    94 
  532    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   532 
  548  C USDA032R_E05_BE443835Ta13P057B01P037B091R1_039.ab1    70 
  556    USDA032F_E05_BE443835Ta13P057B01P037B091F1_039.ab1   556 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0