No. words: 1315; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:616)  606  0.00 0.00 0.32  USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1        1   618 (36)  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   (45)   616     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   661 
   57    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1    12 
   61  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   601 
   69    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1    24 
  145  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   517 
  157    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   112 
  161  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   501 
  165    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   120 
  225  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   437 
  233    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   188 
  265  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   397 
  281    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   236 
  305  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   357 
  321    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   276 
  345  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   317 
  353    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   308 
  361  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   301 
  393    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   348 
  461  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   201 
  465    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   420 
  469  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   193 
  493    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   448 
  537  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1   125 
  545    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   500 
  569  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1    93 
  573    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   528 
  593  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1    69 
  601    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   556 
  625  C USDA032R_F05_BE443835Ta14P057B01P037B091R1_037.ab1    37 
  637    USDA032F_F05_BE443835Ta14P057B01P037B091F1_037.ab1   592 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0