No. words: 1100; after pruning: 1074


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:507)  497  0.00 0.00 0.39  USDA032F_G02_BE443835Ta15P057A01P037B091F1_004.ab1        1   509 (35)  C USDA032R_G02_BE443835Ta15P057A01P037B091R1_004.ab1   (49)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C USDA032R_G02_BE443835Ta15P057A01P037B091R1_004.ab1   556 
  129    USDA032F_G02_BE443835Ta15P057A01P037B091F1_004.ab1    80 
  137  C USDA032R_G02_BE443835Ta15P057A01P037B091R1_004.ab1   420 
  169    USDA032F_G02_BE443835Ta15P057A01P037B091F1_004.ab1   120 
  181  C USDA032R_G02_BE443835Ta15P057A01P037B091R1_004.ab1   376 
  245    USDA032F_G02_BE443835Ta15P057A01P037B091F1_004.ab1   196 
  309  C USDA032R_G02_BE443835Ta15P057A01P037B091R1_004.ab1   248 
  449    USDA032F_G02_BE443835Ta15P057A01P037B091F1_004.ab1   400 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0