No. words: 1304; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:618)  607  0.00 0.00 0.32  USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1        1   620 (34)  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   (32)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   650 
   84    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1    52 
  104  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   547 
  112    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1    80 
  128  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   523 
  144    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   112 
  164  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   487 
  168    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   136 
  208  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   443 
  220    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   188 
  228  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   423 
  336    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   304 
  408  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   243 
  436    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   404 
  472  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   179 
  500    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   468 
  524  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   127 
  540    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   508 
  548  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1   103 
  564    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   532 
  580  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1    71 
  588    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   556 
  612  C USDA032R_G05_BE443835Ta15P057B01P037B091R1_035.ab1    39 
  616    USDA032F_G05_BE443835Ta15P057B01P037B091F1_035.ab1   584 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0