No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.3 (1,1:503)  492  0.00 0.20 0.20  USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1        1   503 (46)  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   (48)   504     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   552 
  112    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1    63 
  116  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   437 
  152    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   103 
  160  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   393 
  240    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   191 
  312  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   241 
  388    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   339 
  412  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   141 
  444    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   395 
  452  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1   101 
  456    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   407 
  500  C USDA032R_H02_BE443835Ta16P057A01P037B091R1_002.ab1    53 
  508    USDA032F_H02_BE443835Ta16P057A01P037B091F1_002.ab1   459 
Contig length: old 597, new 598

Contig length: old 598, new 598
New start: 0