No. words: 1304; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:618)  607  0.00 0.00 0.32  USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1        1   620 (34)  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   (32)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   650 
   44    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1    12 
   48  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   603 
   56    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1    24 
   60  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   591 
   72    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1    40 
  112  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   539 
  116    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1    84 
  128  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   523 
  140    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   108 
  212  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   439 
  220    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   188 
  228  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   423 
  264    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   232 
  292  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   359 
  336    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   304 
  344  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   307 
  380    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   348 
  404  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   247 
  480    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   448 
  492  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   159 
  500    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   468 
  504  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   147 
  508    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   476 
  524  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1   127 
  536    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   504 
  552  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1    99 
  560    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   528 
  580  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1    71 
  588    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   556 
  596  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1    55 
  600    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   568 
  612  C USDA032R_H05_BE443835Ta16P057B01P037B091R1_033.ab1    39 
  616    USDA032F_H05_BE443835Ta16P057B01P037B091F1_033.ab1   584 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0