No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:500)  494  0.00 0.00 0.20  USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1        1   501 (40)  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   (55)   500     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   555 
   87    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1    32 
   99  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   457 
  111    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1    56 
  115  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   441 
  123    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1    68 
  127  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   429 
  131    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1    76 
  143  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   413 
  155    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   100 
  163  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   393 
  171    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   116 
  175  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   381 
  243    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   188 
  319  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   237 
  387    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   332 
  391  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   165 
  403    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   348 
  439  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1   117 
  447    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   392 
  491  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1    65 
  495    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   440 
  499  C USDA032R_A03_BE443835Ta17P057A01P037B091R1_031.ab1    57 
  503    USDA032F_A03_BE443835Ta17P057A01P037B091F1_031.ab1   448 
Contig length: old 595, new 596

Contig length: old 596, new 596
New start: 0