No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:617)  505  0.19 0.00 0.38  USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1      101   620 (34)  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   (0)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1     1 
  172  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   447 
  192    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   192 
  228  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   391 
  236    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   236 
  296  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   323 
  304    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   304 
  340  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   279 
  452    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   452 
  460  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   159 
  464    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   464 
  492  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1   127 
  500    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   500 
  524  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1    95 
  528    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   528 
  544  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1    75 
  556    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   556 
  584  C USDA032R_A06_BE443835Ta17P057B01P037B091R1_048.ab1    35 
  588    USDA032F_A06_BE443835Ta17P057B01P037B091F1_048.ab1   588 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0