No. words: 1090; after pruning: 1064


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.0 (1,1:497)  490  0.00 0.00 0.20  USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1        1   497 (42)  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   (54)   497     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   551 
  126    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1    72 
  134  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   418 
  242    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1   188 
  270  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   282 
  302    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1   248 
  310  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   242 
  338    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1   284 
  382  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1   170 
  386    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1   332 
  474  C USDA032R_C03_BE443835Ta19P057A01P037B091R1_027.ab1    78 
  478    USDA032F_C03_BE443835Ta19P057A01P037B091F1_027.ab1   424 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0