No. words: 1303; after pruning: 1277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:618)  607  0.00 0.00 0.32  USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1        1   620 (33)  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   (32)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   650 
   40    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1     8 
   48  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   603 
   56    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1    24 
   60  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   591 
   68    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1    36 
  104  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   547 
  116    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1    84 
  136  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   515 
  156    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   124 
  204  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   447 
  216    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   184 
  252  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   399 
  268    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   236 
  272  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   379 
  336    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   304 
  344  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   307 
  380    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   348 
  404  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   247 
  416    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   384 
  472  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   179 
  484    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   452 
  492  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1   159 
  496    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   464 
  576  C USDA032R_C06_BE443835Ta19P057B01P037B091R1_044.ab1    75 
  600    USDA032F_C06_BE443835Ta19P057B01P037B091F1_044.ab1   568 
Contig length: old 684, new 685

Contig length: old 685, new 685
New start: 0