No. words: 1093; after pruning: 1067


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.0 (1,1:498)  494  0.00 0.00 0.00  USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1        1   496 (42)  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1   (56)   499     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1   555 
  132    USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1    76 
  140  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1   416 
  180    USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1   124 
  320  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1   236 
  340    USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1   284 
  360  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1   196 
  388    USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1   332 
  492  C USDA032R_D03_BE443835Ta20P057A01P037B091R1_025.ab1    64 
  508    USDA032F_D03_BE443835Ta20P057A01P037B091F1_025.ab1   452 
Contig length: old 594, new 594

Contig length: old 594, new 594
New start: 0