No. words: 1277; after pruning: 1251


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:616)  589  0.65 0.16 0.32  USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1        1   618 (36)  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   (6)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1     1 
  221  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   396 
  225    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   225 
  237  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   380 
  245    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   245 
  253  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   364 
  269    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   269 
  297  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   320 
  305    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   305 
  373  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   244 
  385    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   385 
  397  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   220 
  405    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   405 
  425  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   192 
  449    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   449 
  501  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1   116 
  505    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   505 
  549  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1    68 
  553    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   553 
  577  C USDA032R_D06_BE443835Ta20P057B01P037B091R1_042.ab1    40 
  581    USDA032F_D06_BE443835Ta20P057B01P037B091F1_042.ab1   581 
Contig length: old 660, new 654

Contig length: old 654, new 654
New start: 0