No. words: 1115; after pruning: 1089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.3 (1,1:521)  490  0.00 0.78 0.19  USDA032F_E03_BE443835Ta21P057A01P037B091F1_023.ab1        9   521 (44)  C USDA032R_E03_BE443835Ta21P057A01P037B091R1_023.ab1   (33)   517     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C USDA032R_E03_BE443835Ta21P057A01P037B091R1_023.ab1   550 
  414    USDA032F_E03_BE443835Ta21P057A01P037B091F1_023.ab1   385 
Contig length: old 593, new 594

Contig length: old 594, new 594
New start: 0