No. words: 1315; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:617)  602  0.00 0.16 0.32  USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1        1   619 (32)  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   (46)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   664 
   72    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1    25 
   76  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   589 
   96    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1    49 
  100  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   565 
  104    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1    57 
  108  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   557 
  124    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1    77 
  140  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   525 
  236    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   189 
  264  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   401 
  288    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   241 
  328  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   337 
  352    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   305 
  444  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   221 
  496    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   449 
  504  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   161 
  512    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   465 
  540  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1   125 
  544    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   497 
  568  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1    97 
  576    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   529 
  592  C USDA032R_E06_BE443835Ta21P057B01P037B091R1_040.ab1    73 
  604    USDA032F_E06_BE443835Ta21P057B01P037B091F1_040.ab1   557 
Contig length: old 697, new 698

Contig length: old 698, new 698
New start: 0