No. words: 1317; after pruning: 1291


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:616)  567  1.13 0.49 0.49  USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1        1   618 (37)  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   (44)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   662 
   56    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1    12 
   76  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   587 
   84    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1    40 
  336  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   325 
  344    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   300 
  376  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   285 
  392    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   348 
  416  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   245 
  492    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   448 
  536  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   125 
  540    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   496 
  544  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1   117 
  552    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   508 
  568  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1    93 
  572    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   528 
  592  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1    69 
  596    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   552 
  620  C USDA032R_F06_BE443835Ta22P057B01P037B091R1_038.ab1    41 
  636    USDA032F_F06_BE443835Ta22P057B01P037B091F1_038.ab1   592 
Contig length: old 700, new 699

Contig length: old 699, new 699
New start: 0