No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.8 (1,1:498)  487  0.00 0.20 0.20  USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1        1   498 (43)  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   (52)   499     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   551 
  304    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   251 
  308  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   244 
  372    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   319 
  376  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   176 
  392    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   339 
  396  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   156 
  400    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   347 
  412  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   140 
  424    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   371 
  432  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1   120 
  452    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   399 
  456  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1    96 
  468    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   415 
  488  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1    64 
  508    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   455 
  520  C USDA032R_A01_BE443835Td01P057A01P037B091R1_015.ab1    32 
  528    USDA032F_A01_BE443835Td01P057A01P037B091F1_015.ab1   475 
Contig length: old 593, new 594

Contig length: old 594, new 594
New start: 0