No. words: 1316; after pruning: 1290


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.6 (1,1:630)  612  0.00 0.16 0.32  USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1        1   628 (32)  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   (25)   631     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   656 
   95    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1    69 
  103  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   554 
  119    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1    93 
  131  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   526 
  187    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   161 
  203  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   454 
  223    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   197 
  227  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   430 
  263    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   237 
  271  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   386 
  339    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   313 
  431  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   226 
  495    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   469 
  503  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   154 
  539    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   513 
  551  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1   106 
  563    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   537 
  575  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1    82 
  587    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   561 
  611  C USDA032R_A04_BE443835Td01P057B01P037B091R1_032.ab1    46 
  619    USDA032F_A04_BE443835Td01P057B01P037B091F1_032.ab1   593 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0