No. words: 1098; after pruning: 1072


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:501)  491  0.00 0.00 0.40  USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1        1   503 (38)  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   (56)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   557 
  240    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   184 
  248  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   310 
  288    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   232 
  308  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   250 
  388    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   332 
  400  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   158 
  404    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   348 
  432  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1   126 
  448    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   392 
  468  C USDA032R_B01_BE443835Td02P057A01P037B091R1_013.ab1    90 
  472    USDA032F_B01_BE443835Td02P057A01P037B091F1_013.ab1   416 
Contig length: old 596, new 597

Contig length: old 597, new 597
New start: 0