No. words: 1102; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.6 (1,1:504)  500  0.00 0.00 0.00  USDA032F_C01_BE443835Td03P057A01P037B091F1_011.ab1        1   502 (45)  C USDA032R_C01_BE443835Td03P057A01P037B091R1_011.ab1   (50)   505     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C USDA032R_C01_BE443835Td03P057A01P037B091R1_011.ab1   555 
  130    USDA032F_C01_BE443835Td03P057A01P037B091F1_011.ab1    80 
  134  C USDA032R_C01_BE443835Td03P057A01P037B091R1_011.ab1   422 
  242    USDA032F_C01_BE443835Td03P057A01P037B091F1_011.ab1   192 
  278  C USDA032R_C01_BE443835Td03P057A01P037B091R1_011.ab1   278 
  358    USDA032F_C01_BE443835Td03P057A01P037B091F1_011.ab1   308 
Contig length: old 597, new 597

Contig length: old 597, new 597
New start: 0