No. words: 1299; after pruning: 1273


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:618)  607  0.00 0.00 0.32  USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1        1   620 (29)  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   (32)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   650 
   76    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1    44 
   80  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   571 
   84    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1    52 
  100  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   551 
  116    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1    84 
  128  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   523 
  220    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   188 
  252  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   399 
  296    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   264 
  408  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   243 
  480    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   448 
  492  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   159 
  500    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   468 
  504  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   147 
  508    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   476 
  524  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   127 
  536    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   504 
  548  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1   103 
  564    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   532 
  576  C USDA032R_C04_BE443835Td03P057B01P037B091R1_028.ab1    75 
  588    USDA032F_C04_BE443835Td03P057B01P037B091F1_028.ab1   556 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0