No. words: 1117; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.9 (1,1:522)  503  0.00 0.39 0.19  USDA032F_D01_BE443835Td04P057A01P037B091F1_009.ab1        5   522 (45)  C USDA032R_D01_BE443835Td04P057A01P037B091R1_009.ab1   (30)   520     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C USDA032R_D01_BE443835Td04P057A01P037B091R1_009.ab1   550 
  458    USDA032F_D01_BE443835Td04P057A01P037B091F1_009.ab1   430 
Contig length: old 594, new 595

Contig length: old 595, new 595
New start: 0