No. words: 1299; after pruning: 1273


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.3 (1,1:612)  600  0.00 0.16 0.16  USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1        1   612 (34)  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   (40)   613     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   653 
   94    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1    53 
  106  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   548 
  122    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1    81 
  134  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   520 
  230    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   189 
  266  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   388 
  274    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   233 
  278  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   376 
  342    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   301 
  410  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   244 
  422    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   381 
  438  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   216 
  454    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   413 
  482  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   172 
  494    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   453 
  530  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1   124 
  546    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   505 
  562  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1    92 
  566    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   525 
  590  C USDA032R_D04_BE443835Td04P057B01P037B091R1_026.ab1    64 
  594    USDA032F_D04_BE443835Td04P057B01P037B091F1_026.ab1   553 
Contig length: old 686, new 687

Contig length: old 687, new 687
New start: 0