No. words: 1102; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.8 (1,1:505)  492  0.00 0.20 0.20  USDA032F_E01_BE443835Td05P057A01P037B091F1_007.ab1        1   503 (46)  C USDA032R_E01_BE443835Td05P057A01P037B091R1_007.ab1   (47)   506     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA032R_E01_BE443835Td05P057A01P037B091R1_007.ab1   553 
  131    USDA032F_E01_BE443835Td05P057A01P037B091F1_007.ab1    83 
  139  C USDA032R_E01_BE443835Td05P057A01P037B091R1_007.ab1   415 
  239    USDA032F_E01_BE443835Td05P057A01P037B091F1_007.ab1   191 
  287  C USDA032R_E01_BE443835Td05P057A01P037B091R1_007.ab1   267 
  303    USDA032F_E01_BE443835Td05P057A01P037B091F1_007.ab1   255 
  307  C USDA032R_E01_BE443835Td05P057A01P037B091R1_007.ab1   247 
  403    USDA032F_E01_BE443835Td05P057A01P037B091F1_007.ab1   355 
Contig length: old 596, new 597

Contig length: old 597, new 597
New start: 0