No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:547)  541  0.00 0.18 0.00  USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1        1   548 (100)  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1   (32)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1   581 
  226    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   193 
  238  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1   344 
  338    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   305 
  402  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1   180 
  498    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   465 
  506  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1    76 
  514    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   481 
  526  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1    56 
  538    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   505 
  558  C USDA032R_E04_BE443835Td05P057B01P037B091R1_024.ab1    24 
  562    USDA032F_E04_BE443835Td05P057B01P037B091F1_024.ab1   529 
Contig length: old 681, new 681

Contig length: old 681, new 681
New start: 0