No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.2 (1,1:506)  497  0.00 0.00 0.20  USDA032F_F01_BE443835Td06P057A01P037B091F1_005.ab1        1   504 (44)  C USDA032R_F01_BE443835Td06P057A01P037B091R1_005.ab1   (47)   506     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C USDA032R_F01_BE443835Td06P057A01P037B091R1_005.ab1   553 
  171    USDA032F_F01_BE443835Td06P057A01P037B091F1_005.ab1   124 
  179  C USDA032R_F01_BE443835Td06P057A01P037B091R1_005.ab1   375 
  239    USDA032F_F01_BE443835Td06P057A01P037B091F1_005.ab1   192 
Contig length: old 594, new 595

Contig length: old 595, new 595
New start: 0