No. words: 1307; after pruning: 1281


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.4 (1,1:612)  600  0.00 0.16 0.16  USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1        1   612 (41)  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1   (41)   613     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1   654 
   95    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1    53 
  107  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1   548 
  227    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   185 
  415  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1   240 
  503    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   461 
  535  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1   120 
  547    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   505 
  563  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1    92 
  571    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   529 
  591  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1    64 
  607    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   565 
  619  C USDA032R_F04_BE443835Td06P057B01P037B091R1_022.ab1    36 
  631    USDA032F_F04_BE443835Td06P057B01P037B091F1_022.ab1   589 
Contig length: old 694, new 695

Contig length: old 695, new 695
New start: 0