No. words: 1088; after pruning: 1062


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.5 (1,1:493)  481  0.20 0.00 0.20  USDA032F_G01_BE443835Td07P057A01P037B091F1_003.ab1        1   491 (43)  C USDA032R_G01_BE443835Td07P057A01P037B091R1_003.ab1   (61)   493     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA032R_G01_BE443835Td07P057A01P037B091R1_003.ab1   554 
  101    USDA032F_G01_BE443835Td07P057A01P037B091F1_003.ab1    40 
  117  C USDA032R_G01_BE443835Td07P057A01P037B091R1_003.ab1   438 
  125    USDA032F_G01_BE443835Td07P057A01P037B091F1_003.ab1    64 
  175  C USDA032R_G01_BE443835Td07P057A01P037B091R1_003.ab1   380 
  447    USDA032F_G01_BE443835Td07P057A01P037B091F1_003.ab1   386 
Contig length: old 594, new 595

Contig length: old 595, new 595
New start: 0