No. words: 1309; after pruning: 1283


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:612)  606  0.00 0.00 0.16  USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1        1   613 (41)  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   (43)   612     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   655 
   87    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1    44 
   91  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   565 
   99    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1    56 
  111  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   545 
  119    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1    76 
  139  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   517 
  159    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   116 
  167  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   489 
  235    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   192 
  279  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   377 
  347    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   304 
  355  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   301 
  511    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   468 
  535  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1   121 
  547    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   504 
  591  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1    65 
  599    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   556 
  619  C USDA032R_G04_BE443835Td07P057B01P037B091R1_020.ab1    37 
  623    USDA032F_G04_BE443835Td07P057B01P037B091F1_020.ab1   580 
Contig length: old 696, new 697

Contig length: old 697, new 697
New start: 0