No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.2 (1,1:492)  480  0.20 0.00 0.20  USDA032F_H01_BE443835Td08P057A01P037B091F1_001.ab1        1   490 (42)  C USDA032R_H01_BE443835Td08P057A01P037B091R1_001.ab1   (61)   492     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA032R_H01_BE443835Td08P057A01P037B091R1_001.ab1   553 
   98    USDA032F_H01_BE443835Td08P057A01P037B091F1_001.ab1    37 
  118  C USDA032R_H01_BE443835Td08P057A01P037B091R1_001.ab1   436 
  122    USDA032F_H01_BE443835Td08P057A01P037B091F1_001.ab1    61 
  134  C USDA032R_H01_BE443835Td08P057A01P037B091R1_001.ab1   420 
  138    USDA032F_H01_BE443835Td08P057A01P037B091F1_001.ab1    77 
  142  C USDA032R_H01_BE443835Td08P057A01P037B091R1_001.ab1   412 
  146    USDA032F_H01_BE443835Td08P057A01P037B091F1_001.ab1    85 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0